STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0415Identified by match to protein family HMM PF00149. (242 aa)    
Predicted Functional Partners:
FSU_0252
Identified by match to protein family HMM PF00023.
    
 0.991
FSU_2328
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
  
 
 0.973
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
   
 0.919
hepA
RNA polymerase-associated protein HepA; Identified by similarity to SP:P23852; match to protein family HMM PF00176; match to protein family HMM PF00271.
   
 0.892
FSU_0230
Hypothetical protein; Identified by glimmer; putative.
   
 0.848
FSU_0928
Hypothetical protein; Identified by glimmer; putative.
   
 0.848
folA
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
     
 0.823
FSU_1318
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254; match to protein family HMM PF01346.
    
 
 0.816
fklB
Peptidyl-prolyl cis-trans isomerase FklB; Identified by similarity to SP:P39311; similarity to SP:P51752; match to protein family HMM PF00254.
    
 
 0.816
FSU_2256
Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254.
    
 
 0.816
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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