STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0419Conserved hypothetical protein; Identified by similarity to GB:BAC95865.1. (439 aa)    
Predicted Functional Partners:
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.953
FSU_0418
GDXG family protein; Identified by similarity to SP:P18773; match to protein family HMM PF07859.
   
   0.650
FSU_2329
Conserved domain protein; Identified by similarity to GB:BAC15296.1.
   
 0.649
FSU_2686
Identified by match to protein family HMM PF01694.
   
 0.571
FSU_3116
Identified by match to protein family HMM PF01694.
   
 0.571
nuoBC
NADH-quinone oxidoreductase, B/C subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 
 0.554
FSU_1159
Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.
  
 0.524
FSU_1233
Peptidase, M16 family; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193.
  
 0.524
FSU_1453
Peptidase M16 domain protein; Identified by match to protein family HMM PF05193.
  
 0.524
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.433
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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