STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0432Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352. (213 aa)    
Predicted Functional Partners:
FSU_0433
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.949
FSU_0435
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.921
FSU_0436
Conserved hypothetical protein; Identified by similarity to GB:BAC58430.1.
 
     0.901
FSU_0434
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:VC1547; match to protein family HMM PF01618.
 
   0.866
FSU_1354
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
 0.806
FSU_0431
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
    0.783
FSU_0430
Putative membrane protein; Identified by similarity to GB:CAE18578.1.
       0.773
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
 0.741
FSU_1356
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.707
FSU_1659
Conserved hypothetical protein; Identified by similarity to PIR:D83547.
 
 
 0.663
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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