STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrcAPenicillin-binding protein 1A; Identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. (797 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.
  
 
 0.786
FSU_2410
Putative rod shape-determining protein RodA; Identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.
  
   
 0.716
FSU_1914
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
   
 0.704
FSU_0040
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
   
 0.699
ftsW
Cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.
  
   
 0.697
FSU_1317
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
   
 0.696
FSU_3179
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.
 
   
 0.693
FSU_2426
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.688
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
   
 0.672
FSU_1799
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
   
 0.671
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.