STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0463M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551. (510 aa)    
Predicted Functional Partners:
FSU_2426
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
 
   
 0.562
FSU_2254
Two component regulator propeller family protein.
  
     0.554
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.482
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
     0.472
FSU_1446
Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.
 
  
 0.468
FSU_0464
Putative lipoprotein.
       0.463
FSU_1799
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.463
FSU_1155
Conserved hypothetical protein; Identified by similarity to GB:CAD78756.1.
  
     0.462
FSU_3272
Conserved domain protein; Identified by match to protein family HMM PF04685.
  
     0.462
FSU_2957
Stage II sporulation protein D-like protein; Identified by similarity to SP:P07372; similarity to SP:Q02113; match to protein family HMM PF08486; match to protein family HMM TIGR02669.
 
   
 0.454
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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