Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_0498LPS O-antigen translocase; Identified by similarity to SP:P27834. (418 aa)    
Predicted Functional Partners:
FSU_0501
Putative lipoprotein.
 
     0.851
FSU_0497
Glycosyltransferase; Identified by similarity to GB:AAC44786.1; match to protein family HMM PF00535.
 
    0.805
FSU_0499
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by similarity to SP:P14290; match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.782
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
  
     0.733
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.722
FSU_0358
Conserved hypothetical protein; Identified by similarity to GB:AAM36557.1.
 
     0.708
FSU_1905
Conserved hypothetical protein; Identified by similarity to GB:AAM71309.1.
  
     0.695
FSU_2368
Conserved domain protein; Identified by similarity to PIR:D83762; match to protein family HMM TIGR02171.
  
     0.688
FSU_0357
wxcM family protein; Identified by similarity to GB:AAO06351.1; match to protein family HMM PF05523.
 
  
 0.676
rfbB
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P37777; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01181.
  
  
 0.670
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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