STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0501Putative lipoprotein. (337 aa)    
Predicted Functional Partners:
FSU_0989
Putative cell division protein; Essential cell division protein.
 
 
 0.948
FSU_0498
LPS O-antigen translocase; Identified by similarity to SP:P27834.
 
     0.851
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.798
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
   0.796
FSU_0402
Conserved domain protein; Identified by similarity to PIR:T07884.
 
   
 0.777
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.774
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
  
     0.768
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.754
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.752
FSU_1095
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
    0.743
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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