FSU_0504 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0504

PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534. (255 aa)

Predicted Functional Partners:

FSU_0252

0.929

dnaJ

0.919

dnaK

0.896

FSU_2334

0.896

trxB

0.885

FSU_0569

0.863

FSU_0570

0.863

sodB

0.850

FSU_0522

0.847

FSU_2935

0.845

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0252	FSU_0504	FSU_0252	FSU_0504	Identified by match to protein family HMM PF00023.	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	0.929
FSU_0252	FSU_0522	FSU_0252	FSU_0522	Identified by match to protein family HMM PF00023.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.600
FSU_0252	FSU_0569	FSU_0252	FSU_0569	Identified by match to protein family HMM PF00023.	Mov34/MPN/PAD-1 family protein; Identified by similarity to GB:CAE10107.1; match to protein family HMM PF01398.	0.649
FSU_0252	FSU_0570	FSU_0252	FSU_0570	Identified by match to protein family HMM PF00023.	Identified by match to protein family HMM PF01398.	0.649
FSU_0252	FSU_2334	FSU_0252	FSU_2334	Identified by match to protein family HMM PF00023.	Putative chaperone protein DnaK; Identified by match to protein family HMM PF00012.	0.643
FSU_0252	dnaJ	FSU_0252	FSU_0184	Identified by match to protein family HMM PF00023.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.826
FSU_0252	dnaK	FSU_0252	FSU_0185	Identified by match to protein family HMM PF00023.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.643
FSU_0504	FSU_0252	FSU_0504	FSU_0252	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Identified by match to protein family HMM PF00023.	0.929
FSU_0504	FSU_0522	FSU_0504	FSU_0522	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	0.847
FSU_0504	FSU_0569	FSU_0504	FSU_0569	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Mov34/MPN/PAD-1 family protein; Identified by similarity to GB:CAE10107.1; match to protein family HMM PF01398.	0.863
FSU_0504	FSU_0570	FSU_0504	FSU_0570	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Identified by match to protein family HMM PF01398.	0.863
FSU_0504	FSU_2334	FSU_0504	FSU_2334	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Putative chaperone protein DnaK; Identified by match to protein family HMM PF00012.	0.896
FSU_0504	FSU_2935	FSU_0504	FSU_2935	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Hypothetical protein; Identified by glimmer; putative.	0.845
FSU_0504	dnaJ	FSU_0504	FSU_0184	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]	0.919
FSU_0504	dnaK	FSU_0504	FSU_0185	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.896
FSU_0504	sodB	FSU_0504	FSU_0477	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.850
FSU_0504	trxB	FSU_0504	FSU_0650	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	Thioredoxin-disulfide reductase; Identified by similarity to SP:P50971; match to protein family HMM PF01134; match to protein family HMM PF07992.	0.885
FSU_0522	FSU_0252	FSU_0522	FSU_0252	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Identified by match to protein family HMM PF00023.	0.600
FSU_0522	FSU_0504	FSU_0522	FSU_0504	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.	0.847
FSU_0522	FSU_2334	FSU_0522	FSU_2334	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.	Putative chaperone protein DnaK; Identified by match to protein family HMM PF00012.	0.423

page 1 of 3

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About