Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_0512Putative oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to GB:AAN51427.1; match to protein family HMM PF00528. (359 aa)    
Predicted Functional Partners:
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
 0.996
FSU_1688
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
  
 0.985
FSU_2760
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01RS1379; match to protein family HMM PF00005.
  
  0.983
FSU_1687
Putative oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to PIR:S75333; match to protein family HMM PF00005.
  
  0.978
FSU_0250
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.915
FSU_1690
Putative oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to PIR:H75068; match to protein family HMM PF00528.
  
 0.911
FSU_2542
Extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.
 
  
 0.849
FSU_3073
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P27675; match to protein family HMM PF00005.
 
      0.829
FSU_0851
Extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.
 
  
 0.738
FSU_0025
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P10346; match to protein family HMM PF00005.
 
      0.733
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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