STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0513Conserved hypothetical protein; Identified by similarity to GB:AAM23515.1; match to protein family HMM PF07075. (380 aa)    
Predicted Functional Partners:
FSU_1695
Beta-lactamase; Identified by match to protein family HMM PF00144.
  
 0.983
FSU_2249
Identified by match to protein family HMM PF00933.
 
  0.907
FSU_2693
Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     0.906
FSU_0514
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
       0.773
FSU_0515
Hypothetical protein; Identified by glimmer; putative.
       0.732
FSU_2592
Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
 
  0.643
FSU_0511
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
       0.608
FSU_0512
Putative oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to GB:AAN51427.1; match to protein family HMM PF00528.
       0.608
FSU_2250
Putative microcin immunity protein; Identified by similarity to SP:Q47511; match to protein family HMM PF02016.
  
     0.577
FSU_0516
Hypothetical protein; Identified by glimmer; putative.
       0.448
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.