STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0522Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (1265 aa)    
Predicted Functional Partners:
FSU_0504
PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.
   
 0.847
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
 
 
 0.818
FSU_0501
Putative lipoprotein.
 
 
   0.796
FSU_0167
Identified by similarity to SP:P35160; similarity to SP:P45523; match to protein family HMM PF00578; match to protein family HMM PF08534.
 
 
   0.791
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
     0.786
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
 
    0.786
FSU_1095
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
 
  
 0.785
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
     0.784
FSU_0792
Hypothetical protein; Identified by glimmer; putative.
 
   
 0.781
FSU_3272
Conserved domain protein; Identified by match to protein family HMM PF04685.
  
 
   0.778
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.