STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0560Conserved hypothetical protein; Identified by similarity to GB:CAE27785.1; match to protein family HMM PF07883. (200 aa)    
Predicted Functional Partners:
FSU_0558
O-acetylhomoserine sulfhydrylase; Identified by similarity to PIR:T44655; match to protein family HMM PF01053; match to protein family HMM TIGR01326.
   
   0.796
FSU_0559
Conserved hypothetical protein; Identified by similarity to GB:CAE27786.1.
       0.773
FSU_1544
Putative nitrogenase molybdenum-iron protein, beta subunit; Identified by similarity to SP:P71527; match to protein family HMM PF00148.
  
     0.624
FSU_1545
Putative nitrogenase molybdenum-iron protein, alpha subunit; Identified by similarity to SP:P55170; match to protein family HMM PF00148.
  
     0.582
FSU_0127
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF08279.
  
  
 0.575
cobB
cobB protein; Identified by similarity to GB:AAC78722.1; match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily.
 
    0.558
FSU_1534
Putative nitrogenase, molybdenum-iron protein, beta subunit; Identified by similarity to SP:P11347; match to protein family HMM PF00148.
  
     0.503
FSU_0561
Putative membrane protein; Identified by similarity to OMNI:NTL01CA0536.
       0.498
FSU_0557
Conserved hypothetical protein.
       0.443
bioB-2
Putative biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
   
   0.429
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.