Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_0566Conserved hypothetical protein; Identified by similarity to SP:O29697; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family. (82 aa)    
Predicted Functional Partners:
thiS_2
Thiamine biosynthesis protein ThiS; Identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683.
 
 
   0.903
FSU_0569
Mov34/MPN/PAD-1 family protein; Identified by similarity to GB:CAE10107.1; match to protein family HMM PF01398.
 
     0.897
FSU_0861
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
   
 0.890
FSU_0568
Identified by match to protein family HMM PF00899; match to protein family HMM PF05237.
 
  
 0.815
FSU_0546
Putative sulfite reductase; Identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.804
FSU_0570
Identified by match to protein family HMM PF01398.
 
     0.804
FSU_0573
Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.
  
 
 0.727
FSU_2156
Phosphoadenosine phosphosulfate reductase domain protein; Identified by match to protein family HMM PF01507.
  
 
  0.621
FSU_0565
Cys/Met metabolism PLP-dependent enzyme; Identified by match to protein family HMM PF01053.
 
  
  0.613
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.577
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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