STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FSU_0582Putative inorganic pyrophosphatase, manganese-dependent; Identified by similarity to SP:P37487; match to protein family HMM PF01368. (340 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by similarity to SP:P17922; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
    0.712
ppa
Inorganic diphosphatase; Identified by similarity to SP:P38576; match to protein family HMM PF00719.
     
 0.522
FSU_1921
Glyoxalase family protein; Identified by similarity to GB:AAP27170.1; match to protein family HMM PF00903.
     
 0.488
atpA
V-type ATPase, A subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
     
  0.483
atpB
V-type ATPase, B subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
     
  0.483
atpD
V-type ATPase, D subunit; Identified by match to protein family HMM PF01813; match to protein family HMM TIGR00309.
     
  0.483
atpI
V-type ATPase, I subunit; Identified by match to protein family HMM PF01496.
     
  0.483
FSU_0860
Hydrolase, haloacid dehalogenase family; Identified by match to protein family HMM PF00702.
     
  0.483
FSU_1937
Conserved hypothetical protein; Identified by similarity to SP:P43933.
     
  0.483
FSU_2714
Phosphatase, Ppx/GppA family; Identified by match to protein family HMM PF02541.
    
  0.482
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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