STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0602Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (323 aa)    
Predicted Functional Partners:
FSU_0601
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP:P15031; match to protein family HMM PF00005.
 0.999
FSU_1944
Putative periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
 0.980
FSU_0603
Putative lipoprotein.
       0.773
pal
Putative peptidoglycan-associated lipoprotein; Identified by similarity to SP:P07176; match to protein family HMM PF00691; Belongs to the Pal lipoprotein family.
       0.762
tolB
Tol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF04052; match to protein family HMM PF07676.
       0.751
FSU_0606
TonB family protein.
       0.751
FSU_0607
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
  
 0.708
FSU_2231
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
  
 0.422
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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