STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
palPutative peptidoglycan-associated lipoprotein; Identified by similarity to SP:P07176; match to protein family HMM PF00691; Belongs to the Pal lipoprotein family. (192 aa)    
Predicted Functional Partners:
tolB
Tol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF04052; match to protein family HMM PF07676.
 
   0.950
FSU_0607
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
 
 
   0.856
FSU_0606
TonB family protein.
 
    0.807
FSU_0603
Putative lipoprotein.
  
    0.790
FSU_0602
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.762
FSU_3206
Lipoprotein releasing system transmembrane protein, LolC/E family; Identified by match to protein family HMM PF02687.
  
 
 
 0.723
FSU_0601
Iron compound ABC transporter, ATP-binding protein; Identified by similarity to SP:P15031; match to protein family HMM PF00005.
       0.649
rpsA
Ribosomal protein S1; Identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717.
  
  
 0.604
FSU_2654
Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303.
  
 
   0.539
FSU_0253
Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.
 
 
 
 0.465
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.