STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0607Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472. (138 aa)    
Predicted Functional Partners:
tolB
Tol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF04052; match to protein family HMM PF07676.
 
    0.889
pal
Putative peptidoglycan-associated lipoprotein; Identified by similarity to SP:P07176; match to protein family HMM PF00691; Belongs to the Pal lipoprotein family.
 
 
   0.850
FSU_1356
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.797
FSU_0434
MotA/TolQ/ExbB proton channel family protein; Identified by similarity to OMNI:VC1547; match to protein family HMM PF01618.
 
   0.757
FSU_0606
TonB family protein.
 
     0.721
FSU_2235
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.710
FSU_0602
Iron compound ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.708
FSU_0435
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.705
FSU_1355
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
   0.668
FSU_0603
Putative lipoprotein.
  
  
 0.637
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.