STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0621Conserved domain protein; Identified by similarity to SP:Q8TTI1; match to protein family HMM PF04101. (395 aa)    
Predicted Functional Partners:
FSU_0620
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
     0.754
FSU_2883
Conserved hypothetical protein; Identified by similarity to PIR:G81669.
  
     0.749
FSU_2740
cysZ family protein.
  
     0.700
FSU_0619
Conserved hypothetical protein; Identified by similarity to GB:AAS08109.1.
       0.693
FSU_1905
Conserved hypothetical protein; Identified by similarity to GB:AAM71309.1.
  
     0.634
FSU_0501
Putative lipoprotein.
  
     0.623
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
  
     0.602
FSU_0498
LPS O-antigen translocase; Identified by similarity to SP:P27834.
  
     0.583
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.580
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.