STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0630Hypothetical protein; Identified by glimmer; putative. (461 aa)    
Predicted Functional Partners:
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0632
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0633
Putative mglB protein; Identified by similarity to GB:AAA25388.2.
       0.773
FSU_0634
Putative gliding motility protein MlgA; Identified by similarity to PIR:B32048.
       0.701
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
 
 0.691
FSU_0635
Hypothetical protein; Identified by glimmer; putative.
       0.623
FSU_2363
Putative membrane-associated zinc metalloprotease; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.
  
  
 0.527
FSU_0636
Ribosomal protein S20; Identified by similarity to SP:P02378.
       0.519
FSU_2655
Outer membrane protein, OmpH family; Identified by similarity to GB:AAD23980.1; match to protein family HMM PF03938.
  
  
 0.482
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
  
    0.445
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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