FSU_0643 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0643

Identified by match to protein family HMM PF01704. (462 aa)

Predicted Functional Partners:

murA

0.901

FSU_0099

0.900

FSU_3251

0.900

lpxA

0.800

rfbK

0.722

mraY

0.589

FSU_2875

0.571

FSU_0644

0.563

FSU_0405

0.504

FSU_0252

0.429

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0099	FSU_0643	FSU_0099	FSU_0643	Conserved hypothetical protein; Identified by similarity to GB:AAO76741.1; match to protein family HMM PF01636.	Identified by match to protein family HMM PF01704.	0.900
FSU_0252	FSU_0643	FSU_0252	FSU_0643	Identified by match to protein family HMM PF00023.	Identified by match to protein family HMM PF01704.	0.429
FSU_0405	FSU_0643	FSU_0405	FSU_0643	Putative peptide chain release factor; Identified by similarity to GB:AAP04114.1.	Identified by match to protein family HMM PF01704.	0.504
FSU_0405	FSU_2875	FSU_0405	FSU_2875	Putative peptide chain release factor; Identified by similarity to GB:AAP04114.1.	Conserved hypothetical protein; Identified by similarity to GB:CAD76504.1.	0.776
FSU_0643	FSU_0099	FSU_0643	FSU_0099	Identified by match to protein family HMM PF01704.	Conserved hypothetical protein; Identified by similarity to GB:AAO76741.1; match to protein family HMM PF01636.	0.900
FSU_0643	FSU_0252	FSU_0643	FSU_0252	Identified by match to protein family HMM PF01704.	Identified by match to protein family HMM PF00023.	0.429
FSU_0643	FSU_0405	FSU_0643	FSU_0405	Identified by match to protein family HMM PF01704.	Putative peptide chain release factor; Identified by similarity to GB:AAP04114.1.	0.504
FSU_0643	FSU_0644	FSU_0643	FSU_0644	Identified by match to protein family HMM PF01704.	Hypothetical protein; Identified by glimmer; putative.	0.563
FSU_0643	FSU_2875	FSU_0643	FSU_2875	Identified by match to protein family HMM PF01704.	Conserved hypothetical protein; Identified by similarity to GB:CAD76504.1.	0.571
FSU_0643	FSU_3251	FSU_0643	FSU_3251	Identified by match to protein family HMM PF01704.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.	0.900
FSU_0643	lpxA	FSU_0643	FSU_2004	Identified by match to protein family HMM PF01704.	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.	0.800
FSU_0643	mraY	FSU_0643	FSU_0642	Identified by match to protein family HMM PF01704.	phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by similarity to GB:AAG22121.1; match to protein family HMM PF00953.	0.589
FSU_0643	murA	FSU_0643	FSU_0600	Identified by match to protein family HMM PF01704.	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.	0.901
FSU_0643	rfbK	FSU_0643	FSU_1843	Identified by match to protein family HMM PF01704.	Phosphomannomutase; Identified by similarity to SP:Q00330; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880.	0.722
FSU_0644	FSU_0643	FSU_0644	FSU_0643	Hypothetical protein; Identified by glimmer; putative.	Identified by match to protein family HMM PF01704.	0.563
FSU_0644	mraY	FSU_0644	FSU_0642	Hypothetical protein; Identified by glimmer; putative.	phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by similarity to GB:AAG22121.1; match to protein family HMM PF00953.	0.429
FSU_2875	FSU_0405	FSU_2875	FSU_0405	Conserved hypothetical protein; Identified by similarity to GB:CAD76504.1.	Putative peptide chain release factor; Identified by similarity to GB:AAP04114.1.	0.776
FSU_2875	FSU_0643	FSU_2875	FSU_0643	Conserved hypothetical protein; Identified by similarity to GB:CAD76504.1.	Identified by match to protein family HMM PF01704.	0.571
FSU_3251	FSU_0643	FSU_3251	FSU_0643	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.	Identified by match to protein family HMM PF01704.	0.900
FSU_3251	lpxA	FSU_3251	FSU_2004	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852.	0.806