STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0651Putative xylanase; Identified by similarity to GB:AAC27700.1; match to protein family HMM PF01270. (371 aa)    
Predicted Functional Partners:
FSU_0652
Putative lipoprotein; Identified by match to protein family HMM PF07661; match to protein family HMM TIGR02145.
       0.757
FSU_2898
Putative lipoprotein.
 
     0.749
FSU_0196
Putative mannanase; Identified by similarity to SP:P51529; match to protein family HMM PF00150; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.732
FSU_2292
Xylanase XynD; Identified by similarity to GB:AAG36764.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
 
   
 0.729
FSU_2269
Xylanase/xylosidase; Identified by match to protein family HMM PF03422; match to protein family HMM PF04616.
 
     0.724
xynE
Xylanase XynE; Identified by similarity to GB:AAG36765.1; match to protein family HMM PF00331; match to protein family HMM PF03422.
 
   
 0.719
FSU_2851
Glycosyl hydrolase, family 10; Identified by match to protein family HMM PF00331.
 
   
 0.713
FSU_2294
Xylanase XynB; Identified by match to protein family HMM PF00331; match to protein family HMM PF03422.
 
   
 0.710
FSU_1165
Beta-1,4-mannanase, man26B; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.707
FSU_2864
Putative acetyl xylan esterase; Identified by similarity to GB:AAC14690.1; match to protein family HMM PF03629.
  
     0.699
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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