STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0652Putative lipoprotein; Identified by match to protein family HMM PF07661; match to protein family HMM TIGR02145. (304 aa)    
Predicted Functional Partners:
FSU_2434
Hypothetical protein; Identified by glimmer; putative.
  
     0.769
FSU_0651
Putative xylanase; Identified by similarity to GB:AAC27700.1; match to protein family HMM PF01270.
       0.757
FSU_1973
Conserved hypothetical protein; Identified by similarity to GB:BAC59619.1.
  
     0.692
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.655
FSU_0335
Hypothetical protein; Identified by glimmer; putative.
  
     0.644
FSU_2000
Antigen-like protein; Identified by similarity to GB:AAQ66633.1.
  
     0.634
FSU_0101
Putative lipoprotein.
  
     0.594
FSU_0459
Conserved hypothetical protein.
  
     0.592
FSU_1462
Conserved domain protein; Identified by similarity to GB:AAN53510.1.
  
     0.592
FSU_0728
Conserved domain protein; Identified by similarity to GB:AAO78735.1; match to protein family HMM PF09603; match to protein family HMM TIGR02145.
  
     0.589
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.