FSU_0661 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0661

Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137. (203 aa)

Predicted Functional Partners:

FSU_0660

0.992

FSU_0658

0.985

FSU_0662

0.984

FSU_3112

0.904

FSU_0659

0.787

FSU_0718

0.754

FSU_2254

0.742

FSU_1310

0.738

FSU_0703

0.721

FSU_3107

0.721

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_0658	FSU_0659	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Hypothetical protein; Identified by glimmer; putative.	0.791
FSU_0658	FSU_0660	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	0.926
FSU_0658	FSU_0661	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.	0.985
FSU_0658	FSU_0662	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Putative type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726.	0.919
FSU_0658	FSU_0703	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Type II secretion system protein; Identified by match to protein family HMM PF00437.	0.682
FSU_0658	FSU_3107	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Putative general secretion pathway protein E; Identified by similarity to SP:P37093; match to protein family HMM PF00437; match to protein family HMM PF05157.	0.695
FSU_0658	FSU_3112	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	Conserved domain protein; Identified by similarity to GB:BAB88862.1.	0.471
FSU_0659	FSU_0658	Hypothetical protein; Identified by glimmer; putative.	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	0.791
FSU_0659	FSU_0660	Hypothetical protein; Identified by glimmer; putative.	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	0.791
FSU_0659	FSU_0661	Hypothetical protein; Identified by glimmer; putative.	Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.	0.787
FSU_0659	FSU_0662	Hypothetical protein; Identified by glimmer; putative.	Putative type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726.	0.787
FSU_0660	FSU_0658	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	0.926
FSU_0660	FSU_0659	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Hypothetical protein; Identified by glimmer; putative.	0.791
FSU_0660	FSU_0661	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.	0.992
FSU_0660	FSU_0662	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Putative type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726.	0.927
FSU_0660	FSU_0718	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Putative membrane protein.	0.706
FSU_0660	FSU_1310	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Hypothetical protein; Identified by glimmer; putative.	0.707
FSU_0660	FSU_2254	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Two component regulator propeller family protein.	0.706
FSU_0660	FSU_3112	Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.	Conserved domain protein; Identified by similarity to GB:BAB88862.1.	0.400
FSU_0661	FSU_0658	Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.	Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.	0.985