STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0662Putative type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726. (382 aa)    
Predicted Functional Partners:
FSU_0661
Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.
 
 
 0.984
FSU_0660
Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.
 
 
 0.927
FSU_0658
Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.
 
 
 0.919
FSU_0659
Hypothetical protein; Identified by glimmer; putative.
       0.787
FSU_0847
LysM domain protein; Identified by match to protein family HMM PF01476.
  
 
   0.732
pilC
Pilus assembly protein PilC; Identified by similarity to PIR:B35384; match to protein family HMM PF00482.
 
 
 
 0.699
pilD
Type 4 prepilin-like protein leader peptide processing enzyme; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
 
  
 0.668
FSU_0634
Putative gliding motility protein MlgA; Identified by similarity to PIR:B32048.
  
   
 0.597
pilT
Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.566
FSU_0663
Hypothetical protein; Identified by glimmer; putative.
       0.553
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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