STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0669Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551. (671 aa)    
Predicted Functional Partners:
FSU_2883
Conserved hypothetical protein; Identified by similarity to PIR:G81669.
  
     0.718
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
   
 0.691
FSU_3094
Conserved hypothetical protein; Identified by similarity to GB:AAO77240.1.
 
  
 0.682
FSU_2125
Putative lipoprotein.
  
     0.667
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.654
FSU_1905
Conserved hypothetical protein; Identified by similarity to GB:AAM71309.1.
  
     0.650
FSU_0718
Putative membrane protein.
  
     0.647
FSU_0828
Conserved domain protein; Identified by match to protein family HMM PF03993.
  
     0.644
FSU_3310
Putative membrane protein.
  
     0.621
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.606
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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