Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| FSU_0039 | FSU_0680 | FSU_0039 | FSU_0680 | Conserved hypothetical protein TIGR00486; Identified by similarity to GB:AAM77721.1; match to protein family HMM PF01784; match to protein family HMM TIGR00486. | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | 0.504 |
| FSU_0678 | FSU_0680 | FSU_0678 | FSU_0680 | Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145. | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | 0.461 |
| FSU_0680 | FSU_0039 | FSU_0680 | FSU_0039 | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | Conserved hypothetical protein TIGR00486; Identified by similarity to GB:AAM77721.1; match to protein family HMM PF01784; match to protein family HMM TIGR00486. | 0.504 |
| FSU_0680 | FSU_0678 | FSU_0680 | FSU_0678 | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | Putative lipoprotein; Identified by match to protein family HMM PF09603; match to protein family HMM TIGR02145. | 0.461 |
| FSU_0680 | pdxS | FSU_0680 | FSU_0681 | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.613 |
| FSU_0680 | pdxT | FSU_0680 | FSU_0682 | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.507 |
| pdxS | FSU_0680 | FSU_0681 | FSU_0680 | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | 0.613 |
| pdxS | pdxT | FSU_0681 | FSU_0682 | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.999 |
| pdxT | FSU_0680 | FSU_0682 | FSU_0680 | Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392. | 0.507 |
| pdxT | pdxS | FSU_0682 | FSU_0681 | Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | Pyridoxine biosynthesis protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.999 |