STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0700Outer membrane efflux protein; Identified by match to protein family HMM PF02321. (471 aa)    
Predicted Functional Partners:
FSU_0701
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.889
FSU_0702
Transporter, AcrB/AcrD/AcrF family; Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.840
FSU_1330
Conserved hypothetical protein; Identified by similarity to GB:AAO79009.1; match to protein family HMM PF00529.
 
 
 0.726
FSU_1331
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.719
FSU_2690
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
  
     0.670
FSU_2691
Putative membrane protein; Identified by match to protein family HMM PF03739; overlaps another CDS with the same product name.
  
     0.668
FSU_2056
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.663
FSU_1064
Conserved hypothetical protein; Identified by similarity to GB:AAO76435.1.
  
     0.643
FSU_2125
Putative lipoprotein.
  
     0.554
FSU_1359
Conserved domain protein; Identified by similarity to GB:AAO77279.1; match to protein family HMM PF07715.
  
   
 0.553
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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