STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0711Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515. (445 aa)    
Predicted Functional Partners:
FSU_0504
PDZ/thioredoxin domain protein; Identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534.
    
 0.795
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
   0.790
FSU_2254
Two component regulator propeller family protein.
  
     0.761
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.759
FSU_0101
Putative lipoprotein.
  
     0.734
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.729
FSU_0382
Cellulase; Identified by similarity to GB:AAC45377.1; match to protein family HMM PF03425.
  
     0.728
FSU_0631
Hypothetical protein; Identified by glimmer; putative.
  
     0.728
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
  
    0.728
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.694
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.