STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0744Cysteine desulfurase auxiliary chain SufE; Identified by match to protein family HMM PF02657. (148 aa)    
Predicted Functional Partners:
FSU_0743
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0745
Conserved hypothetical protein; Identified by similarity to GB:AAM02858.1; match to protein family HMM PF01266.
       0.773
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 
 0.720
sufC
FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978.
 
   0.658
FSU_0949
FeS assembly protein SufD; Identified by similarity to SP:P77689; match to protein family HMM PF01458.
 
 
 0.573
FSU_1510
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.557
FSU_0746
Pentapeptide repeat domain protein; Identified by match to protein family HMM PF00805.
       0.538
FSU_0575
Cysteine desulfurase SufS; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.495
FSU_2159
Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.
  
 
 0.495
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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