Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_0745Conserved hypothetical protein; Identified by similarity to GB:AAM02858.1; match to protein family HMM PF01266. (398 aa)    
Predicted Functional Partners:
FSU_0444
Prenyltransferase, UbiA family; Identified by match to protein family HMM PF01040.
 
 
 0.822
FSU_0743
Hypothetical protein; Identified by glimmer; putative.
       0.773
FSU_0744
Cysteine desulfurase auxiliary chain SufE; Identified by match to protein family HMM PF02657.
       0.773
etfB
Electron transfer flavoprotein, beta subunit; Identified by similarity to SP:O85691; match to protein family HMM PF01012.
  
 
 0.765
FSU_2397
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.577
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.569
FSU_1626
Identified by match to protein family HMM PF01564.
     
  0.557
FSU_0391
Identified by match to protein family HMM PF00494.
  
 
 0.554
FSU_0746
Pentapeptide repeat domain protein; Identified by match to protein family HMM PF00805.
  
    0.544
FSU_2120
FG-GAP repeat protein; Identified by match to protein family HMM PF01839.
  
     0.515
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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