STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0746Pentapeptide repeat domain protein; Identified by match to protein family HMM PF00805. (439 aa)    
Predicted Functional Partners:
FSU_0971
Putative DNA topoisomerase IV, B subunit; Identified by match to protein family HMM PF00204; match to protein family HMM PF02518.
   
 
 0.738
FSU_1312
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.738
FSU_3272
Conserved domain protein; Identified by match to protein family HMM PF04685.
  
     0.659
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
  
 0.550
FSU_0745
Conserved hypothetical protein; Identified by similarity to GB:AAM02858.1; match to protein family HMM PF01266.
  
    0.542
FSU_0744
Cysteine desulfurase auxiliary chain SufE; Identified by match to protein family HMM PF02657.
       0.538
FSU_0743
Hypothetical protein; Identified by glimmer; putative.
       0.537
FSU_0027
Hypothetical protein; Identified by glimmer; putative.
  
     0.492
FSU_0364
Diacylglycerol kinase domain protein; Identified by match to protein family HMM PF00609; match to protein family HMM PF00781.
  
     0.485
FSU_0252
Identified by match to protein family HMM PF00023.
 
   
 0.455
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.