STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0758Identified by match to protein family HMM PF09603; match to protein family HMM TIGR01352; match to protein family HMM TIGR02145. (484 aa)    
Predicted Functional Partners:
FSU_0759
Conserved domain protein; Identified by similarity to OMNI:NTL01FN0619; match to protein family HMM PF07661; match to protein family HMM TIGR02145.
      
0.636
FSU_0760
Hypothetical protein; Identified by glimmer; putative.
       0.604
FSU_0757
Conserved hypothetical protein; Identified by similarity to GB:AAL62597.1.
       0.553
FSU_1659
Conserved hypothetical protein; Identified by similarity to PIR:D83547.
  
 
 0.512
FSU_2231
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
 
 0.512
FSU_0433
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
  
 
 0.488
FSU_0607
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
 
 0.488
FSU_1354
Biopolymer transport protein, ExbD/TolR family; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
  
 
 0.488
FSU_2236
Biopolymer transport protein, ExbD/TolR family; Identified by match to protein family HMM PF02472.
  
 
 0.488
FSU_2402
Conserved hypothetical protein; Identified by similarity to GB:AAO22897.1.
  
 
 0.488
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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