STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0759Conserved domain protein; Identified by similarity to OMNI:NTL01FN0619; match to protein family HMM PF07661; match to protein family HMM TIGR02145. (347 aa)    
Predicted Functional Partners:
FSU_0760
Hypothetical protein; Identified by glimmer; putative.
       0.732
FSU_2434
Hypothetical protein; Identified by glimmer; putative.
  
     0.708
FSU_2752
Conserved hypothetical protein; Identified by similarity to GB:AAL94239.1; match to protein family HMM PF07661.
  
     0.659
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
   0.650
FSU_0758
Identified by match to protein family HMM PF09603; match to protein family HMM TIGR01352; match to protein family HMM TIGR02145.
      
0.636
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
  
     0.550
FSU_0335
Hypothetical protein; Identified by glimmer; putative.
  
     0.542
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
     0.533
obg
GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
       0.525
FSU_1352
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.500
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.