FSU_0764 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0764

Identified by match to protein family HMM PF01520. (355 aa)

Predicted Functional Partners:

FSU_2426

0.900

FSU_0253

0.782

FSU_2686

0.730

smpB

0.715

FSU_3116

0.694

FSU_1446

0.681

hup_1

0.679

obg

0.620

FSU_3179

0.616

rlpA

0.568

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0253	FSU_0764	FSU_0253	FSU_0764	Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.	Identified by match to protein family HMM PF01520.	0.782
FSU_0253	FSU_1446	FSU_0253	FSU_1446	Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	0.421
FSU_0253	FSU_3179	FSU_0253	FSU_3179	Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.	0.517
FSU_0764	FSU_0253	FSU_0764	FSU_0253	Identified by match to protein family HMM PF01520.	Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.	0.782
FSU_0764	FSU_1446	FSU_0764	FSU_1446	Identified by match to protein family HMM PF01520.	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	0.681
FSU_0764	FSU_2426	FSU_0764	FSU_2426	Identified by match to protein family HMM PF01520.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.900
FSU_0764	FSU_2686	FSU_0764	FSU_2686	Identified by match to protein family HMM PF01520.	Identified by match to protein family HMM PF01694.	0.730
FSU_0764	FSU_3116	FSU_0764	FSU_3116	Identified by match to protein family HMM PF01520.	Identified by match to protein family HMM PF01694.	0.694
FSU_0764	FSU_3179	FSU_0764	FSU_3179	Identified by match to protein family HMM PF01520.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.	0.616
FSU_0764	hup_1	FSU_0764	FSU_0762	Identified by match to protein family HMM PF01520.	DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family.	0.679
FSU_0764	obg	FSU_0764	FSU_0761	Identified by match to protein family HMM PF01520.	GTP-binding protein Obg/CgtA; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.620
FSU_0764	rlpA	FSU_0764	FSU_2476	Identified by match to protein family HMM PF01520.	Rare lipoprotein A family protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.	0.568
FSU_0764	smpB	FSU_0764	FSU_0763	Identified by match to protein family HMM PF01520.	SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]	0.715
FSU_1446	FSU_0253	FSU_1446	FSU_0253	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.	0.421
FSU_1446	FSU_0764	FSU_1446	FSU_0764	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	Identified by match to protein family HMM PF01520.	0.681
FSU_1446	FSU_2426	FSU_1446	FSU_2426	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	0.540
FSU_1446	FSU_3179	FSU_1446	FSU_3179	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.	0.507
FSU_2426	FSU_0764	FSU_2426	FSU_0764	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Identified by match to protein family HMM PF01520.	0.900
FSU_2426	FSU_1446	FSU_2426	FSU_1446	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Putative soluble lytic murein transglycosylase; Identified by similarity to SP:P03810; match to protein family HMM PF01464.	0.540
FSU_2426	FSU_3179	FSU_2426	FSU_3179	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.	Peptidase, M23/M37 family; Identified by match to protein family HMM PF01476; match to protein family HMM PF01551.	0.820