STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0788Putative anti-anti-sigma factor; Identified by similarity to SP:P17903; match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family. (98 aa)    
Predicted Functional Partners:
FSU_0789
ATPase domain protein.
 
 0.997
FSU_2103
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.
 
 0.919
FSU_1028
rsbU domain protein; Identified by similarity to SP:P40399; match to protein family HMM PF07228.
 
 0.913
FSU_2384
HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.
 
 0.913
FSU_3000
Putative membrane protein; Identified by match to protein family HMM PF07228; overlaps another CDS with the same product name.
 
 0.913
FSU_0147
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.
  
 
 0.896
FSU_0748
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
 0.875
FSU_2295
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.759
FSU_0067
Sensory box/GGDEF domain/EAL domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
 
 0.723
FSU_1084
HDIG/GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM PF08495; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.
  
 
  0.680
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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