FSU_0789 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0789

ATPase domain protein. (137 aa)

Predicted Functional Partners:

FSU_0788

0.995

FSU_2103

0.988

FSU_2998

0.988

FSU_3000

0.986

FSU_2384

0.983

FSU_1028

0.980

FSU_2835

0.952

FSU_0147

0.926

FSU_0748

0.867

FSU_0539

0.856

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FSU_0147	FSU_0539	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Hypothetical protein; Identified by glimmer; putative.	0.499
FSU_0147	FSU_0748	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.983
FSU_0147	FSU_0788	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Putative anti-anti-sigma factor; Identified by similarity to SP:P17903; match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.	0.853
FSU_0147	FSU_0789	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	ATPase domain protein.	0.926
FSU_0147	FSU_1028	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	rsbU domain protein; Identified by similarity to SP:P40399; match to protein family HMM PF07228.	0.828
FSU_0147	FSU_2103	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.	0.930
FSU_0147	FSU_2384	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.	0.837
FSU_0147	FSU_2835	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	STAS domain protein; Identified by match to protein family HMM PF01740.	0.853
FSU_0147	FSU_2998	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Putative anti-sigma-B factor antagonist; Identified by similarity to SP:P17903; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.	0.853
FSU_0147	FSU_3000	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	Putative membrane protein; Identified by match to protein family HMM PF07228; overlaps another CDS with the same product name.	0.828
FSU_0539	FSU_0147	Hypothetical protein; Identified by glimmer; putative.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.499
FSU_0539	FSU_0748	Hypothetical protein; Identified by glimmer; putative.	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	0.494
FSU_0539	FSU_0789	Hypothetical protein; Identified by glimmer; putative.	ATPase domain protein.	0.856
FSU_0748	FSU_0147	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518.	0.983
FSU_0748	FSU_0539	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Hypothetical protein; Identified by glimmer; putative.	0.494
FSU_0748	FSU_0788	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Putative anti-anti-sigma factor; Identified by similarity to SP:P17903; match to protein family HMM PF01740; Belongs to the anti-sigma-factor antagonist family.	0.793
FSU_0748	FSU_0789	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	ATPase domain protein.	0.867
FSU_0748	FSU_1028	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	rsbU domain protein; Identified by similarity to SP:P40399; match to protein family HMM PF07228.	0.760
FSU_0748	FSU_2103	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.	0.836
FSU_0748	FSU_2384	Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.	HAMP domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF02743; match to protein family HMM PF07228.	0.760