STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0799Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368. (509 aa)    
Predicted Functional Partners:
FSU_0895
Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.
 
 0.906
FSU_2411
comF family protein.
 
  
 0.812
FSU_0800
Stage V sporulation protein G-like protein; Identified by similarity to SP:P28015; Belongs to the SpoVG family.
       0.761
FSU_1258
Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.
 
 
 0.759
FSU_2828
DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.637
FSU_0521
Conserved hypothetical protein TIGR00252; Identified by similarity to SP:O83883; match to protein family HMM PF02021; match to protein family HMM TIGR00252; Belongs to the UPF0102 family.
 
  
 0.586
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.470
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.