STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FSU_0819Conserved hypothetical protein; Identified by similarity to GB:BAC12207.1. (424 aa)    
Predicted Functional Partners:
FSU_0418
GDXG family protein; Identified by similarity to SP:P18773; match to protein family HMM PF07859.
 
  0.905
FSU_0820
Conserved domain protein; Identified by similarity to GB:AAB72118.1; match to protein family HMM TIGR02171.
  
    0.676
FSU_0821
Conserved domain protein; Identified by similarity to PIR:A90337.
  
    0.666
FSU_0822
Hypothetical protein; Identified by glimmer; putative.
       0.598
FSU_0823
Conserved hypothetical protein; Identified by similarity to PIR:H69224.
 
     0.576
FSU_0749
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
  
 
 0.476
FSU_2328
Hydrolase, alpha/beta hydrolase fold family; Identified by match to protein family HMM PF00561.
     
 0.450
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.437
FSU_0364
Diacylglycerol kinase domain protein; Identified by match to protein family HMM PF00609; match to protein family HMM PF00781.
     
  0.408
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
     
  0.408
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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