STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0828Conserved domain protein; Identified by match to protein family HMM PF03993. (969 aa)    
Predicted Functional Partners:
FSU_0829
Sua5/YciO/YrdC/YwlC family/SUA5 domain protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.686
FSU_2434
Hypothetical protein; Identified by glimmer; putative.
  
     0.667
FSU_0669
Peptidase, M23/M37 family; Identified by match to protein family HMM PF01551.
  
     0.644
FSU_0816
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
     0.644
FSU_1944
Putative periplasmic binding protein; Identified by match to protein family HMM PF01497.
 
     0.633
FSU_1462
Conserved domain protein; Identified by similarity to GB:AAN53510.1.
  
     0.609
FSU_2298
Acyltransferase family protein.
  
     0.609
FSU_0522
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
   0.578
FSU_0622
Putative membrane protein; Identified by match to protein family HMM PF08305.
 
     0.568
FSU_1310
Hypothetical protein; Identified by glimmer; putative.
  
   0.562
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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