STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0835Conserved hypothetical protein; Identified by similarity to GB:AAS06079.1. (394 aa)    
Predicted Functional Partners:
FSU_1303
Glycosyl hydrolase, family 13; Identified by match to protein family HMM PF00128.
 0.985
FSU_2442
Identified by match to protein family HMM PF00128.
 0.977
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.968
glgA
Starch synthase; Identified by match to protein family HMM PF00534; match to protein family HMM TIGR02149.
  
  
 0.789
FSU_2595
Glycogen synthase-like protein; Identified by similarity to SP:P39125; match to protein family HMM PF08323.
  
 
  0.756
FSU_1304
Putative 4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446.
 
 
 0.691
glgP
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.656
cysE
Serine acetyltransferase; Identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426.
       0.603
FSU_2018
Conserved domain protein; Identified by similarity to PIR:G72204; match to protein family HMM PF02922.
  
 
 0.577
FSU_1169
Glycosyl hydrolase, family 57; Identified by match to protein family HMM PF03065.
 
  
  0.540
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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