STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0847LysM domain protein; Identified by match to protein family HMM PF01476. (385 aa)    
Predicted Functional Partners:
FSU_0658
Bacterial type II and III secretion system protein; Identified by similarity to SP:P31780; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.
 
 
 
 0.912
FSU_0660
Putative type IV pilus biogenesis protein PilO; Identified by similarity to PIR:S77728.
  
   0.780
FSU_0661
Fimbrial assembly protein PilN; Identified by match to protein family HMM PF05137.
  
 
   0.719
FSU_0662
Putative type IV pilus assembly protein PilM; Identified by similarity to PIR:S77726.
  
 
   0.719
FSU_0845
Conserved hypothetical protein; Identified by similarity to GB:AAK33632.1.
 
     0.719
FSU_2502
Fibro-slime domain protein; Identified by match to protein family HMM TIGR02148.
 
     0.713
FSU_2556
Conserved domain protein; Identified by similarity to GB:AAO52466.1; match to protein family HMM TIGR02148.
  
     0.672
FSU_0436
Conserved hypothetical protein; Identified by similarity to GB:BAC58430.1.
  
     0.670
FSU_0934
Putative transporter; Identified by similarity to GB:AAN68395.1.
  
     0.662
FSU_2298
Acyltransferase family protein.
  
     0.661
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.