FSU_0850 protein (Fibrobacter succinogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FSU_0850

Conserved domain protein; Identified by similarity to GB:AAB85960.1. (843 aa)

Predicted Functional Partners:

FSU_2398

0.822

FSU_0849

0.781

FSU_0848

0.775

FSU_0851

0.535

FSU_0847

0.526

FSU_2475

0.507

adk

0.480

FSU_0630

0.449

FSU_1071

0.449

FSU_1973

0.449

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0630	FSU_0850	FSU_0630	FSU_0850	Hypothetical protein; Identified by glimmer; putative.	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	0.449
FSU_0630	FSU_2398	FSU_0630	FSU_2398	Hypothetical protein; Identified by glimmer; putative.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.	0.678
FSU_0847	FSU_0848	FSU_0847	FSU_0848	LysM domain protein; Identified by match to protein family HMM PF01476.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.532
FSU_0847	FSU_0849	FSU_0847	FSU_0849	LysM domain protein; Identified by match to protein family HMM PF01476.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.549
FSU_0847	FSU_0850	FSU_0847	FSU_0850	LysM domain protein; Identified by match to protein family HMM PF01476.	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	0.526
FSU_0847	FSU_1071	FSU_0847	FSU_1071	LysM domain protein; Identified by match to protein family HMM PF01476.	Hypothetical protein; Identified by glimmer; putative.	0.616
FSU_0847	FSU_2398	FSU_0847	FSU_2398	LysM domain protein; Identified by match to protein family HMM PF01476.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.	0.433
FSU_0847	adk	FSU_0847	FSU_3209	LysM domain protein; Identified by match to protein family HMM PF01476.	Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.	0.492
FSU_0848	FSU_0847	FSU_0848	FSU_0847	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.532
FSU_0848	FSU_0849	FSU_0848	FSU_0849	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.969
FSU_0848	FSU_0850	FSU_0848	FSU_0850	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	0.775
FSU_0848	FSU_0851	FSU_0848	FSU_0851	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.	0.535
FSU_0849	FSU_0847	FSU_0849	FSU_0847	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.549
FSU_0849	FSU_0848	FSU_0849	FSU_0848	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.969
FSU_0849	FSU_0850	FSU_0849	FSU_0850	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	0.781
FSU_0849	FSU_0851	FSU_0849	FSU_0851	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.	0.551
FSU_0850	FSU_0630	FSU_0850	FSU_0630	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	Hypothetical protein; Identified by glimmer; putative.	0.449
FSU_0850	FSU_0847	FSU_0850	FSU_0847	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	LysM domain protein; Identified by match to protein family HMM PF01476.	0.526
FSU_0850	FSU_0848	FSU_0850	FSU_0848	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.775
FSU_0850	FSU_0849	FSU_0850	FSU_0849	Conserved domain protein; Identified by similarity to GB:AAB85960.1.	DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.781