STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0854Serine-type D-Ala-D-Ala carboxypeptidase; Identified by match to protein family HMM PF02557. (226 aa)    
Predicted Functional Partners:
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.773
FSU_1071
Hypothetical protein; Identified by glimmer; putative.
  
     0.643
FSU_0853
Conserved hypothetical protein; Identified by similarity to GB:AAN42938.1.
 
     0.624
FSU_0856
Putative DNA primase; Identified by similarity to SP:P02923; match to protein family HMM PF01807.
       0.548
FSU_0857
Glycosyltransferase, group 1 family; Identified by match to protein family HMM PF00534.
       0.548
dacB
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; Identified by similarity to SP:P39844; match to protein family HMM PF02113; match to protein family HMM PF07313; match to protein family HMM TIGR00666.
     
 0.521
FSU_2501
GGDEF/FHA domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
     
 0.499
FSU_1695
Beta-lactamase; Identified by match to protein family HMM PF00144.
     
  0.483
FSU_0436
Conserved hypothetical protein; Identified by similarity to GB:BAC58430.1.
 
     0.459
FSU_2220
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
     
  0.447
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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