Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FSU_0861Aminotransferase, class V; Identified by match to protein family HMM PF00266. (373 aa)    
Predicted Functional Partners:
FSU_1349
Transcriptional regulator, Rrf2 family; Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.
  
 
 0.943
FSU_0566
Conserved hypothetical protein; Identified by similarity to SP:O29697; match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
   
 0.890
FSU_0957
Conserved domain protein; Identified by similarity to GB:CAE10106.1; Belongs to the sulfur carrier protein TusA family.
   
 0.890
FSU_0573
Identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237; match to protein family HMM TIGR02356.
   
 0.876
FSU_0862
Conserved hypothetical protein; Identified by similarity to GB:AAL95064.1; match to protein family HMM PF01171; Belongs to the TtcA family.
 
   
 0.778
FSU_0568
Identified by match to protein family HMM PF00899; match to protein family HMM PF05237.
   
 0.725
FSU_1510
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
0.717
FSU_0008
2-isopropylmalate synthase/homocitrate synthase family protein; Identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00977; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.670
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.662
FSU_0132
Identified by match to protein family HMM PF01106; match to protein family HMM PF01592.
  
 
 0.650
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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