FSU_0879 protein (Fibrobacter succinogenes) - STRING interaction network

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Score

FSU_0879

Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090. (139 aa)

Predicted Functional Partners:

rplS

0.952

rplT

0.947

rplO

0.937

rplP

0.937

rplU

0.935

rpmF

0.919

rplC

0.918

rplM

0.916

rplI

0.911

rplX

0.904

Your Current Organism:

Fibrobacter succinogenes

NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FSU_0879	rplC	FSU_0879	FSU_1890	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.918
FSU_0879	rplI	FSU_0879	FSU_0902	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L9; Binds to the 23S rRNA.	0.911
FSU_0879	rplM	FSU_0879	FSU_1421	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.916
FSU_0879	rplO	FSU_0879	FSU_1871	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.937
FSU_0879	rplP	FSU_0879	FSU_1883	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.937
FSU_0879	rplS	FSU_0879	FSU_2962	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.952
FSU_0879	rplT	FSU_0879	FSU_1234	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.947
FSU_0879	rplU	FSU_0879	FSU_0312	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.935
FSU_0879	rplX	FSU_0879	FSU_1879	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.904
FSU_0879	rpmF	FSU_0879	FSU_2537	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	Ribosomal protein L32; Identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.919
rplC	FSU_0879	FSU_1890	FSU_0879	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.	0.918
rplC	rplI	FSU_1890	FSU_0902	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L9; Binds to the 23S rRNA.	0.988
rplC	rplM	FSU_1890	FSU_1421	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplO	FSU_1890	FSU_1871	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.998
rplC	rplP	FSU_1890	FSU_1883	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplC	rplS	FSU_1890	FSU_2962	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.986
rplC	rplT	FSU_1890	FSU_1234	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.990
rplC	rplU	FSU_1890	FSU_0312	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.988
rplC	rplX	FSU_1890	FSU_1879	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.991
rplC	rpmF	FSU_1890	FSU_2537	Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L32; Identified by similarity to SP:O34687; match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.978