STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0895Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481. (290 aa)    
Predicted Functional Partners:
FSU_0799
Mg chelatase-like protein; Identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368.
 
 0.898
FSU_2828
DNA internalization competence protein ComEC/Rec2-like protein; Identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.815
FSU_2411
comF family protein.
 
 
 0.793
FSU_0896
Conserved hypothetical protein; Identified by similarity to GB:AAN56436.1; match to protein family HMM PF04977.
       0.779
pilD
Type 4 prepilin-like protein leader peptide processing enzyme; Identified by similarity to SP:P31712; match to protein family HMM PF01478; match to protein family HMM PF06750.
  
  
 0.711
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
     0.659
recJ
single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644.
 
   
 0.582
recG
ATP-dependent DNA helicase RecG; Identified by similarity to SP:Q54900; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851.
  
     0.581
FSU_0894
Identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444.
       0.524
radC
DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
  
  
 0.496
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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