STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0896Conserved hypothetical protein; Identified by similarity to GB:AAN56436.1; match to protein family HMM PF04977. (92 aa)    
Predicted Functional Partners:
FSU_0989
Putative cell division protein; Essential cell division protein.
   
 
 0.887
FSU_0895
Putative DNA processing protein DprA; Identified by similarity to SP:P39813; match to protein family HMM PF02481.
       0.779
FSU_0894
Identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444.
       0.553
FSU_0338
Penicillin binding transpeptidase domain protein; Identified by match to protein family HMM PF00905.
  
 
 0.539
FSU_0995
Putative penicillin-binding protein; Identified by similarity to SP:Q07868; match to protein family HMM PF00905; match to protein family HMM PF03793.
  
 
 0.539
mrdA
Penicillin-binding protein 2; Identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.
  
 
 0.539
FSU_0501
Putative lipoprotein.
   
 
 0.525
ftsW
Cell division protein FtsW; Identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; Belongs to the SEDS family.
   
 
 0.525
FSU_1842
Conserved domain protein; Identified by similarity to GB:AAQ65786.1.
   
 
 0.525
FSU_2410
Putative rod shape-determining protein RodA; Identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; Belongs to the SEDS family.
   
 
 0.525
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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