STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0911Conserved domain protein; Identified by match to protein family HMM PF08757. (626 aa)    
Predicted Functional Partners:
FSU_0451
Cellulase; Identified by similarity to GB:AAA68129.1; match to protein family HMM PF00759.
  
     0.544
FSU_0910
RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.543
FSU_2362
Cellulase; Identified by similarity to GB:AAC44386.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
     0.528
FSU_2361
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
     0.521
FSU_1337
Conserved hypothetical protein; Identified by similarity to GB:BAB97452.1.
 
     0.520
FSU_2013
Cellulase; Identified by similarity to GB:AAC41523.1; match to protein family HMM PF00759; match to protein family HMM PF02927.
  
     0.508
FSU_0889
Putative xylanase; Identified by similarity to GB:AAC27700.1; match to protein family HMM PF01270.
  
    0.465
FSU_2496
Identified by match to protein family HMM PF01522.
  
     0.460
FSU_0613
Putative endoglucanase; Identified by match to protein family HMM PF01270.
  
    0.455
FSU_1167
Beta-1,4-mannanase, man26C; Identified by similarity to SP:P55296; match to protein family HMM PF02156; match to protein family HMM PF03422; Belongs to the glycosyl hydrolase 26 family.
 
     0.443
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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