STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FSU_0916Alginate lyase-like protein; Identified by similarity to GB:BAC87758.1. (290 aa)    
Predicted Functional Partners:
cel-3
Endoglucanase 3; Exhibits both endoglucanase and cellobiosidase activities.
 
  
  0.637
FSU_3030
Putative chitinase; Identified by match to protein family HMM PF00704; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.612
FSU_0810
Glycosyl hydrolase, family 9; Identified by similarity to SP:P04954; match to protein family HMM PF00041; match to protein family HMM PF00759.
  
  
  0.585
FSU_1773
Hypothetical protein; Identified by glimmer; putative.
  
     0.581
FSU_2012
Putative chitinase; Identified by match to protein family HMM PF00704.
 
 
 0.581
FSU_0208
Putative lipoprotein.
  
     0.563
FSU_2303
Glycosyl hydrolase, family 8; Identified by match to protein family HMM PF01270.
  
  
  0.560
FSU_2398
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515.
  
     0.533
FSU_2960
Cyclic nucleotide-binding domain protein; Identified by match to protein family HMM PF00027.
  
     0.529
FSU_0253
Putative membrane-bound lytic murein transglycosylase D; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.
    
 0.507
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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