STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine 2-monooxygenase; Catalyzes the biosynthesis of agmatine from arginine. (632 aa)    
Predicted Functional Partners:
FSU_0241
Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family.
 
  
 0.936
argH
Argininosuccinate lyase; Identified by similarity to SP:O34858; match to protein family HMM PF00206; match to protein family HMM TIGR00838.
     
 0.826
FSU_0922
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535; overlaps another CDS with the same product name.
       0.505
FSU_0923
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535; overlaps another CDS with the same product name.
       0.505
FSU_0920
Putative saccharopine dehydrogenase; Identified by similarity to GP:29895023; match to protein family HMM PF03435.
       0.503
FSU_0924
Glycosyltransferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.498
FSU_0925
Hydrolase, NUDIX family; Identified by similarity to GP:28272372; match to protein family HMM PF00293; match to protein family HMM PF09297.
       0.498
FSU_0919
Hypothetical protein; Identified by glimmer; putative.
       0.416
Your Current Organism:
Fibrobacter succinogenes
NCBI taxonomy Id: 59374
Other names: F. succinogenes subsp. succinogenes S85, Fibrobacter succinogenes S85, Fibrobacter succinogenes subsp. succinogenes S85
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